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Sep 14

ReportLogic: Evaluating Logical Quality in Deep Research Reports

Users increasingly rely on Large Language Models (LLMs) for Deep Research, using them to synthesize diverse sources into structured reports that support understanding and action. In this context, the practical reliability of such reports hinges on logical quality: whether the report's claims and arguments are explicitly supported and can be trusted as a basis for downstream use, rather than merely appearing fluent or informative. However, current evaluation frameworks largely overlook this requirement. To bridge this gap, we introduce ReportLogic, a benchmark that quantifies report-level logical quality through a reader-centric lens of auditability. Specifically, ReportLogic adopts a hierarchical taxonomy that evaluates whether readers can (1) trace an on-topic report structure with a unified analytical arc (Macro-Logic), (2) understand the progression with necessary context (Expositional-Logic), and (3) verify conclusions via explicit claim--support (Structural-Logic). Based on this taxonomy, we construct a human-annotated rubric-guided dataset and train an open-source LogicJudge for scalable evaluation. We further evaluate judge robustness via adversarial attacks, showing that off-the-shelf LLM judges are frequently influenced by superficial cues (e.g., verbosity), and reasoning modes can mask broken support relations. Overall, our results provide actionable guidance for building more robust logic evaluators and improving the logical reliability of LLM-generated reports.

  • 7 authors
·
Jan 27

Differentiable Logic Gate Networks for Low-Latency EEG Classification on Edge Devices

Real-time EEG classification on edge devices is bottlenecked by the floating-point arithmetic of conventional neural networks. We investigated Differentiable Logic Gate Networks (Diff-Logic) as a hardware-native alternative that compiles models into pure Boolean circuits executable via bitwise CPU operations. Through rigorous iso-parameter experiments across four EEG datasets spanning two classification tasks, binary dementia detection and 3-class emotion recognition, we compared Diff-Logic against matched-capacity Multi-Layer Perceptron (MLP) and Binarized Neural Network (BNN) baselines at four complexity tiers (50k-500k parameters). On dementia screening, Diff-Logic achieved 80.2% Macro F1, outperforming the MLP baseline by 6.8%. On emotion recognition, the MLP retained a moderate performance advantage but incurred a 2.3times higher latency and 14times larger model size when deployed on a power-constrained (7W) Nvidia Jetson Orin Nano CPU (Single-core). Critically, Diff-Logic inference time remained nearly constant across a 10times increase in model scale, achieving a peak speedup of 2.9times over MLPs at the largest complexity tier. Our results establish logic-based neural architectures as a practical paradigm for resource-constrained brain-computer interfaces, achieving competitive or superior performance while natively satisfying the latency and memory constraints of portable edge deployment. Code is available on GitHub: https://github.com/Shyamal-Dharia/eeg-difflogic

  • 3 authors
·
Jul 19 2

LogicLens: Visual-Logical Co-Reasoning for Text-Centric Forgery Analysis

Sophisticated text-centric forgeries, fueled by rapid AIGC advancements, pose a significant threat to societal security and information authenticity. Current methods for text-centric forgery analysis are often limited to coarse-grained visual analysis and lack the capacity for sophisticated reasoning. Moreover, they typically treat detection, grounding, and explanation as discrete sub-tasks, overlooking their intrinsic relationships for holistic performance enhancement. To address these challenges, we introduce LogicLens, a unified framework for Visual-Textual Co-reasoning that reformulates these objectives into a joint task. The deep reasoning of LogicLens is powered by our novel Cross-Cues-aware Chain of Thought (CCT) mechanism, which iteratively cross-validates visual cues against textual logic. To ensure robust alignment across all tasks, we further propose a weighted multi-task reward function for GRPO-based optimization. Complementing this framework, we first designed the PR^2 (Perceiver, Reasoner, Reviewer) pipeline, a hierarchical and iterative multi-agent system that generates high-quality, cognitively-aligned annotations. Then, we constructed RealText, a diverse dataset comprising 5,397 images with fine-grained annotations, including textual explanations, pixel-level segmentation, and authenticity labels for model training. Extensive experiments demonstrate the superiority of LogicLens across multiple benchmarks. In a zero-shot evaluation on T-IC13, it surpasses the specialized framework by 41.4% and GPT-4o by 23.4% in macro-average F1 score. Moreover, on the challenging dense-text T-SROIE dataset, it establishes a significant lead over other MLLM-based methods in mF1, CSS, and the macro-average F1. Our dataset, model, and code will be made publicly available.

  • 10 authors
·
Dec 24, 2025

CN-Buzz2Portfolio: A Chinese-Market Dataset and Benchmark for LLM-Based Macro and Sector Asset Allocation from Daily Trending Financial News

Large Language Models (LLMs) are rapidly transitioning from static Natural Language Processing (NLP) tasks including sentiment analysis and event extraction to acting as dynamic decision-making agents in complex financial environments. However, the evolution of LLMs into autonomous financial agents faces a significant dilemma in evaluation paradigms. Direct live trading is irreproducible and prone to outcome bias by confounding luck with skill, whereas existing static benchmarks are often confined to entity-level stock picking and ignore broader market attention. To facilitate the rigorous analysis of these challenges, we introduce CN-Buzz2Portfolio, a reproducible benchmark grounded in the Chinese market that maps daily trending news to macro and sector asset allocation. Spanning a rolling horizon from 2024 to mid-2025, our dataset simulates a realistic public attention stream, requiring agents to distill investment logic from high-exposure narratives instead of pre-filtered entity news. We propose a Tri-Stage CPA Agent Workflow involving Compression, Perception, and Allocation to evaluate LLMs on broad asset classes such as Exchange Traded Funds (ETFs) rather than individual stocks, thereby reducing idiosyncratic volatility. Extensive experiments on nine LLMs reveal significant disparities in how models translate macro-level narratives into portfolio weights. This work provides new insights into the alignment between general reasoning and financial decision-making, and all data, codes, and experiments are released to promote sustainable financial agent research.

  • 6 authors
·
Mar 17

From Skill Text to Skill Structure: The Scheduling-Structural-Logical Representation for Agent Skills

LLM agents increasingly rely on reusable skills, capability packages that combine instructions, control flow, constraints, and tool calls. In most current agent systems, however, skills are still represented by text-heavy artifacts, including SKILL.md-style documents and structured records whose machine-usable evidence remains embedded largely in natural-language descriptions. This poses a challenge for skill-centered agent systems: managing skill collections and using skills to support agent both require reasoning over invocation interfaces, execution structure, and concrete side effects that are often entangled in a single textual surface. An explicit representation of skill knowledge may therefore help make these artifacts easier for machines to acquire and leverage. Drawing on Memory Organization Packets, Script Theory, and Conceptual Dependency from Schank and Abelson's classical work on linguistic knowledge representation, we introduce what is, to our knowledge, the first structured representation for agent skill artifacts that disentangles skill-level scheduling signals, scene-level execution structure, and logic-level action and resource-use evidence: the Scheduling-Structural-Logical (SSL) representation. We instantiate SSL with an LLM-based normalizer and evaluate it on a corpus of skills in two tasks, Skill Discovery and Risk Assessment, and superiorly outperform the text-only baselines: in Skill Discovery, SSL improves MRR from 0.573 to 0.707; in Risk Assessment, it improves macro F1 from 0.744 to 0.787. These findings reveal that explicit, source-grounded structure makes agent skills easier to search and review. They also suggest that SSL is best understood as a practical step toward more inspectable, reusable, and operationally actionable skill representations for agent systems, rather than as a finished standard or an end-to-end mechanism for managing and using skills.

Enhancing Logical Reasoning in Language Models via Symbolically-Guided Monte Carlo Process Supervision

Large language models (LLMs) have shown strong performance in many reasoning benchmarks. However, recent studies have pointed to memorization, rather than generalization, as one of the leading causes for such performance. LLMs, in fact, are susceptible to content variations, demonstrating a lack of robust planning or symbolic abstractions supporting their reasoning process. To improve reliability, many attempts have been made to combine LLMs with symbolic methods. Nevertheless, existing approaches fail to effectively leverage symbolic representations due to the challenges involved in developing reliable and scalable verification mechanisms. In this paper, we propose to overcome such limitations by synthesizing high-quality symbolic reasoning trajectories with stepwise pseudo-labels at scale via Monte Carlo estimation. A Process Reward Model (PRM) can be efficiently trained based on the synthesized data and then used to select more symbolic trajectories. The trajectories are then employed with Direct Preference Optimization (DPO) and Supervised Fine-Tuning (SFT) to improve logical reasoning and generalization. Our results on benchmarks (i.e., FOLIO and LogicAsker) show the effectiveness of the proposed method with gains on frontier and open-weight models. Moreover, additional experiments on claim verification data reveal that fine-tuning on the generated symbolic reasoning trajectories enhances out-of-domain generalizability, suggesting the potential impact of the proposed method in enhancing planning and logical reasoning.

  • 5 authors
·
May 26, 2025

Logic Before Language: Pre-pretraining on Formal Derivations Fosters Skill Acquisition and Compressibility

Pre-pretraining language models (LMs) on symbolic data can accelerate and improve natural language acquisition. However, existing pre-pretraining tasks, such as Dyck and procedural algorithms, rely on narrow primitives that fail to capture the expressive capacity of natural language. Moreover, prior studies remain restricted to relatively small token budgets, offering limited insight into skill emergence and representational dynamics. To address these limitations, we propose logic pre-pretraining (Logic-PPT) as a principled initialization strategy, leveraging formal derivations to impart richer structural and linguistic biases. Formal derivations require abstract mechanisms that are central to natural language, simultaneously binding variables, connecting quantifiers and relational dependencies, and composing predicate-argument structures over long contexts. Scaling our evaluation to a 100B-token regime, logic pre-pretraining substantially accelerates skill acquisition in LMs, achieving 80\% accuracy on linguistic tasks with 36B fewer tokens than standard initialization, and outperforming alternative pre-pretraining baselines. Mechanistically, formal derivations induce persistent structural reorganization, distinctively characterized by a lower-rank, spectrally concentrated representation space. Crucially, we show that this internal geometry enables improved model compressibility via pruning, matching the dense baseline performance even at approx33\% sparsity.

  • 3 authors
·
Aug 3

Retrieval-Guided Reinforcement Learning for Boolean Circuit Minimization

Logic synthesis, a pivotal stage in chip design, entails optimizing chip specifications encoded in hardware description languages like Verilog into highly efficient implementations using Boolean logic gates. The process involves a sequential application of logic minimization heuristics (``synthesis recipe"), with their arrangement significantly impacting crucial metrics such as area and delay. Addressing the challenge posed by the broad spectrum of design complexities - from variations of past designs (e.g., adders and multipliers) to entirely novel configurations (e.g., innovative processor instructions) - requires a nuanced `synthesis recipe` guided by human expertise and intuition. This study conducts a thorough examination of learning and search techniques for logic synthesis, unearthing a surprising revelation: pre-trained agents, when confronted with entirely novel designs, may veer off course, detrimentally affecting the search trajectory. We present ABC-RL, a meticulously tuned alpha parameter that adeptly adjusts recommendations from pre-trained agents during the search process. Computed based on similarity scores through nearest neighbor retrieval from the training dataset, ABC-RL yields superior synthesis recipes tailored for a wide array of hardware designs. Our findings showcase substantial enhancements in the Quality-of-result (QoR) of synthesized circuits, boasting improvements of up to 24.8% compared to state-of-the-art techniques. Furthermore, ABC-RL achieves an impressive up to 9x reduction in runtime (iso-QoR) when compared to current state-of-the-art methodologies.

  • 5 authors
·
Jan 22, 2024

Key-Augmented Neural Triggers for Knowledge Sharing

Repository-level code comprehension and knowledge sharing remain core challenges in software engineering. Large language models (LLMs) have shown promise by generating explanations of program structure and logic. However, these approaches still face limitations: First, relevant knowledge is distributed across multiple files within a repository, aka semantic fragmentation. Second, retrieval inefficiency and attention saturation degrade performance in RAG pipelines, where long, unaligned contexts overwhelm attention. Third, repository specific training data is scarce and often outdated. Finally, proprietary LLMs hinder industrial adoption due to privacy and deployment constraints. To address these issues, we propose Key-Augmented Neural Triggers (KANT), a novel approach that embeds knowledge anchors into both training and inference. Unlike prior methods, KANT enables internal access to repository specific knowledge, reducing fragmentation and grounding inference in localized context. Moreover, we synthesize specialized data directly from code. At inference, knowledge anchors replace verbose context, reducing token overhead and latency while supporting efficient, on premise deployment. We evaluate KANT via: a qualitative human evaluation of the synthesized dataset's intent coverage and quality across five dimensions; compare against SOTA baselines across five qualitative dimensions and inference speed; and replication across different LLMs to assess generalizability. Results show that the synthetic training data aligned with information-seeking needs. KANT achieved over 60% preference from human annotators and a LocalStack expert (preferring 79% of cases). Also, KANT reduced inference latency by up to 85% across all models. Overall, it is well-suited for scalable, low-latency, on-premise deployments, providing a strong foundation for code comprehension.

  • 4 authors
·
Aug 5, 2025

Towards Causally Interpretable Wi-Fi CSI-Based Human Activity Recognition with Discrete Latent Compression and LTL Rule Extraction

We address Human Activity Recognition (HAR) utilizing Wi-Fi Channel State Information (CSI) under the joint requirements of causal interpretability, symbolic controllability, and direct operation on high-dimensional raw signals. Deep neural models achieve strong predictive performance on CSI-based HAR (CHAR), yet rely on continuous latent representations that are opaque and difficult to modify; purely symbolic approaches, in contrast, cannot process raw CSI streams. We propose a fully automatic and strictly decoupled pipeline in which CSI magnitude windows are compressed by a categorical variational autoencoder with Gumbel-Softmax latent variables under a capacity-controlled objective, yielding a compact discrete representation. The encoder is then frozen and used as a deterministic mapping to one-hot latent trajectories. Causal discovery is performed on these trajectories to estimate class-conditional temporal dependency graphs. Statistically supported lagged dependencies are translated into Linear Temporal Logic (LTL) rules, producing a fully symbolic and deterministic classifier based solely on rule evaluation and aggregation, without any learned discriminative head. Because rules are defined over discrete latent variables, antenna-specific rule sets can in principle be combined at the symbolic level, enabling structured multi-antenna fusion without retraining the encoder. Results from CHAR Latent Temporal Rule Extraction (CHARL-TRE) indicate competitive performance while preserving explicit temporal and causal structure, showing that deterministic symbolic classification grounded in unsupervised discrete latent representations constitutes a viable alternative to end-to-end black-box models for wireless HAR.

  • 13 authors
·
Apr 23

Programmable and GPU-Accelerated Edge Inference for Real-Time ISAC on NVIDIA Aerial Testbed

The transition of cellular networks to (i) software-based systems on commodity hardware and (ii) platforms for services beyond connectivity introduces critical system-level challenges. As sensing emerges as a key feature toward 6G standardization, supporting Integrated Sensing and Communication (ISAC) with limited bandwidth and piggybacking on communication signals, while maintaining high reliability and performance, remains a fundamental challenge. In this paper, we provide two key contributions. First, we present a programmable, open-source framework for processing PHY/MAC signals through real-time, GPU-accelerated Artificial Intelligence (AI) applications on the edge Radio Access Network (RAN) infrastructure. Building on the Open RAN dApp architecture, the framework interfaces with a GPU-accelerated gNB based on NVIDIA Aerial Testbed (ATB), feeding PHY/MAC data to custom AI logic with a framework overhead of 150 us, multiple inference engines, and support for several AI backends. We evaluate the framework on multiple GPU platforms with and without hardware-level GPU isolation. Second, we demonstrate the framework capabilities through cuSense, an indoor localization dApp that consumes uplink DMRS channel estimates, removes static multipath components, and runs a neural network to infer the position of a moving person. Evaluated on a 3GPP-compliant 5G NR deployment, cuSense achieves a mean localization error of 77 cm, with 75% of predictions falling within 1 meter, without dedicated sensing hardware or modifications to the RAN stack or signals. The framework is released as open source, providing a reference design for future AI-native RANs and ISAC applications.

  • 6 authors
·
Apr 14

Compliance versus Sensibility: On the Reasoning Controllability in Large Language Models

Large Language Models (LLMs) are known to acquire reasoning capabilities through shared inference patterns in pre-training data, which are further elicited via Chain-of-Thought (CoT) practices. However, whether fundamental reasoning patterns, such as induction, deduction, and abduction, can be decoupled from specific problem instances remains a critical challenge for model controllability, and for shedding light on reasoning controllability. In this paper, we present the first systematic investigation of this problem through the lens of reasoning conflicts: an explicit tension between parametric and contextual information induced by mandating logical schemata that deviate from those expected for a target task. Our evaluation reveals that LLMs consistently prioritize sensibility over compliance, favoring task-appropriate reasoning patterns despite conflicting instructions. Notably, task accuracy is not strictly determined by sensibility, with models often maintaining high performance even when using conflicting patterns, suggesting a reliance on internalized parametric memory that increases with model size. We further demonstrate that reasoning conflicts are internally detectable, as confidence scores significantly drop during conflicting episodes. Probing experiments confirm that reasoning types are linearly encoded from middle-to-late layers, indicating the potential for activation-level controllability. Leveraging these insights, we steer models towards compliance, increasing instruction following by up to 29%. Overall, our findings establish that while LLM reasoning is anchored to concrete instances, active mechanistic interventions can effectively decouple logical schemata from data, offering a path toward improved controllability, faithfulness, and generalizability.

  • 6 authors
·
Apr 28 2

SciR: A Controllable Benchmark for Scientific Reasoning in LLMs

Three paradigmatic forms of inference recur across scientific reasoning: deduction, induction, and causal abduction. Reliably evaluating LLMs on these in scientific settings is currently out of reach: scientific benchmarks built on human annotations are costly and lack mechanistic ground truth, while synthetic logical-reasoning benchmarks do not resemble real scientific documents. We introduce SciR, a benchmark that combines multi-paradigm reasoning with controllable scientific rendering, anchored on three paradigmatic scientific problems. Tasks are generated from formal objects (deduction tree, inductive rule hypothesis, causal graph) to guarantee verifiable answers, then rendered into multi-document scientific discourse via per-track domain-tuned genres. The construction lets us independently vary two difficulty axes: how hard it is to extract the key information needed for inference, and how hard the principled inference itself is. We test six models. Both axes hurt every model, and their effects compound. The rendering even hurts neurosymbolic pipelines, which hand inference to a verified solver. The two axes yield a per-model extraction-vs-inference profile: for instance, reasoning models like deepseek-r1 mostly surpass non-reasoning instruct models on the inference axis. To our knowledge, SciR is the first multi-paradigm scientific-reasoning benchmark with parametric control on both extraction and inference difficulty.

  • 3 authors
·
Jun 10

Decompose-and-Formalise: Recursively Verifiable Natural Language Inference

Recent work has shown that integrating large language models (LLMs) with theorem provers (TPs) in neuro-symbolic pipelines helps with entailment verification and proof-guided refinement of explanations for natural language inference (NLI). However, scaling such refinement to naturalistic NLI remains difficult: long, syntactically rich inputs and deep multi-step arguments amplify autoformalisation errors, where a single local mismatch can invalidate the proof. Moreover, current methods often handle failures via costly global regeneration due to the difficulty of localising the responsible span or step from prover diagnostics. Aiming to address these problems, we propose a decompose-and-formalise framework that (i) decomposes premise-hypothesis pairs into an entailment tree of atomic steps, (ii) verifies the tree bottom-up to isolate failures to specific nodes, and (iii) performs local diagnostic-guided refinement instead of regenerating the whole explanation. Moreover, to improve faithfulness of autoformalisation, we introduce θ-substitution in an event-based logical form to enforce consistent argument-role bindings. Across a range of reasoning tasks using five LLM backbones, our method achieves the highest explanation verification rates, improving over the state-of-the-art by 26.2%, 21.7%, 21.6% and 48.9%, while reducing refinement iterations and runtime and preserving strong NLI accuracy.

  • 4 authors
·
Jan 27

Beyond Gold Standards: Epistemic Ensemble of LLM Judges for Formal Mathematical Reasoning

Autoformalization plays a crucial role in formal mathematical reasoning by enabling the automatic translation of natural language statements into formal languages. While recent advances using large language models (LLMs) have shown promising results, methods for automatically evaluating autoformalization remain underexplored. As one moves to more complex domains (e.g., advanced mathematics), human evaluation requires significant time and domain expertise, especially as the complexity of the underlying statements and background knowledge increases. LLM-as-a-judge presents a promising approach for automating such evaluation. However, existing methods typically employ coarse-grained and generic evaluation criteria, which limit their effectiveness for advanced formal mathematical reasoning, where quality hinges on nuanced, multi-granular dimensions. In this work, we take a step toward addressing this gap by introducing a systematic, automatic method to evaluate autoformalization tasks. The proposed method is based on an epistemically and formally grounded ensemble (EFG) of LLM judges, defined on criteria encompassing logical preservation (LP), mathematical consistency (MC), formal validity (FV), and formal quality (FQ), resulting in a transparent assessment that accounts for different contributing factors. We validate the proposed framework to serve as a proxy for autoformalization assessment within the domain of formal mathematics. Overall, our experiments demonstrate that the EFG ensemble of LLM judges is a suitable emerging proxy for evaluation, more strongly correlating with human assessments than a coarse-grained model, especially when assessing formal qualities. These findings suggest that LLM-as-judges, especially when guided by a well-defined set of atomic properties, could offer a scalable, interpretable, and reliable support for evaluating formal mathematical reasoning.

  • 3 authors
·
Jun 11, 2025

Hybrid Intelligence

Research has a long history of discussing what is superior in predicting certain outcomes: statistical methods or the human brain. This debate has repeatedly been sparked off by the remarkable technological advances in the field of artificial intelligence (AI), such as solving tasks like object and speech recognition, achieving significant improvements in accuracy through deep-learning algorithms (Goodfellow et al. 2016), or combining various methods of computational intelligence, such as fuzzy logic, genetic algorithms, and case-based reasoning (Medsker 2012). One of the implicit promises that underlie these advancements is that machines will 1 day be capable of performing complex tasks or may even supersede humans in performing these tasks. This triggers new heated debates of when machines will ultimately replace humans (McAfee and Brynjolfsson 2017). While previous research has proved that AI performs well in some clearly defined tasks such as playing chess, playing Go or identifying objects on images, it is doubted that the development of an artificial general intelligence (AGI) which is able to solve multiple tasks at the same time can be achieved in the near future (e.g., Russell and Norvig 2016). Moreover, the use of AI to solve complex business problems in organizational contexts occurs scarcely, and applications for AI that solve complex problems remain mainly in laboratory settings instead of being implemented in practice. Since the road to AGI is still a long one, we argue that the most likely paradigm for the division of labor between humans and machines in the next decades is Hybrid Intelligence. This concept aims at using the complementary strengths of human intelligence and AI, so that they can perform better than each of the two could separately (e.g., Kamar 2016).

  • 4 authors
·
May 3, 2021

Fast-dDrive: Efficient Block-Diffusion VLM for Autonomous Driving

End-to-end autonomous driving via Vision-Language-Action (VLA) models demands a precarious balance between high-fidelity trajectory planning and efficient inference. Existing paradigms typically fall short: autoregressive (AR) VLAs are memory-bandwidth-bound on edge hardware and prone to exposure-bias drift, while full-sequence diffusion models preclude KV-cache reuse and suffer from "logical leakage" that violates the fundamental perceive-then-plan causality. We present Fast-dDrive, a block-diffusion VLA that performs bidirectional refinement within semantic units while enforcing strict causal ordering across them. Leveraging the observation that driving VLAs often emit structured JSON-like outputs, Fast-dDrive freezes structural tokens into a section scaffold and employs a section-aware training recipe that prioritizes safety-critical planning. We further introduce Scaffold Speculative Decoding to achieve AR-equivalent quality at significantly higher throughput. Finally, we propose a low-overhead test-time scaling scheme: by forking N stochastic trajectory rollouts from a single shared-prefix KV cache and averaging them, we effectively suppress prediction variance at a fractional computational cost. Empirical results demonstrate that Fast-dDrive redefines the speed-accuracy frontier for driving agents. On the WOD-E2E test set, Fast-dDrive achieves SOTA ADE@3s and ADE@5s, alongside the highest RFS among diffusion-based VLAs; on nuScenes, it reduces average L2 error to 0.32m (a 22% improvement). When integrated with SGLang, our framework delivers 12times throughput speedup over the AR baseline, narrowing the gap between high-capacity VLAs and the efficiency demands of real-time on-vehicle deployment.

nvidia NVIDIA
·
May 24 2

Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations

The COVID-19 pandemic has been severely impacting global society since December 2019. Massive research has been undertaken to understand the characteristics of the virus and design vaccines and drugs. The related findings have been reported in biomedical literature at a rate of about 10,000 articles on COVID-19 per month. Such rapid growth significantly challenges manual curation and interpretation. For instance, LitCovid is a literature database of COVID-19-related articles in PubMed, which has accumulated more than 200,000 articles with millions of accesses each month by users worldwide. One primary curation task is to assign up to eight topics (e.g., Diagnosis and Treatment) to the articles in LitCovid. Despite the continuing advances in biomedical text mining methods, few have been dedicated to topic annotations in COVID-19 literature. To close the gap, we organized the BioCreative LitCovid track to call for a community effort to tackle automated topic annotation for COVID-19 literature. The BioCreative LitCovid dataset, consisting of over 30,000 articles with manually reviewed topics, was created for training and testing. It is one of the largest multilabel classification datasets in biomedical scientific literature. 19 teams worldwide participated and made 80 submissions in total. Most teams used hybrid systems based on transformers. The highest performing submissions achieved 0.8875, 0.9181, and 0.9394 for macro F1-score, micro F1-score, and instance-based F1-score, respectively. The level of participation and results demonstrate a successful track and help close the gap between dataset curation and method development. The dataset is publicly available via https://ftp.ncbi.nlm.nih.gov/pub/lu/LitCovid/biocreative/ for benchmarking and further development.

  • 39 authors
·
Apr 20, 2022